Table 2: Characteristics of the SSR markers of the Chickpea Genotype Identification kit

Marker name

Motif

Forward primer sequence (5'-3')

Reverse primer sequence (5'-3')

Source

T°a

Map (linkage group location)

CaSTMS2

(TAT)25

ATTTTACTTTACTACTTTTTTCCTTTC

AATAAATGGAGTGTAAATTTCATGTA

Huttel et al. 1999

59

LG4

CaSTMS15

(ATT)21

CTTGTGAATTCATATTTACTTATAGAT

ATCCGTAATTTAAGGTAGGTTAAAATA

Huttel et al. 1999

59

LG4

CaSTMS21

(CT)9 n(CTTT)2 (CT)4

CTACAGTCTTTTGTTCTTCTAGCTT

ATATTTTTTAAGAGGCTTTTGGTAG

Huttel et al. 1999

59

LG6

TA14

(TAA)22n(TAA)4T(A)3n(AAT)5n(A)3(GAT)4(TAA)5

TGACTTGCTATTTAGGGAACA

TGGCTAAAGACAATTAAAGTT

Winter et al. 1999

59

LG6

TA21

(TAA)51

GTACCTCGAAGATGTAGCCGATA

TTTTCCATTTAGAGTAGGATCTTCTTG

Winter et al. 1999

59

LG5

TA22

(ATT)40

TCTCCAACCCTTTAGATTGA

TCGTGTTTACTGAATGTGGA

Winter et al. 1999

59

LG4

TA27

(TAA)21

GATAAAATCATTATTGGGTGTCCTTT

TTCAAATAATCTTTCATCAGTCAAATG

Winter et al. 1999

59

LG7

TA28

(TAA)37n(TAA)30

TAATTGATCATACTCTCACTATCTGCC

TGGGAATGAATATATTTTTGAAGTAAA

Winter et al. 1999

59

LG5

TA46

(TAA)22

TTTATTGCAATAAAACTCATTTCTTATC

TTCTTTTTGTGTGAAAAAAAAATATAGTGA

Winter et al. 1999

56

LG2

TA64

(TAA)39

ATATATCGTAACTCATTAATCATCCGC

AAATTGTTGTCATCAAATGGAAAATA

Winter et al. 1999

59

LG1

TA71

(AAT)32

CGATTTAACACAAAACACAAA

CCTATCCATTGTCATCTCGT

Winter et al. 1999

59

LG3

TA72

(ATT)36

GAAAGATTTAAAAGATTTTCCACGTTA

TTAGAAGCATATTGTTGGGATAAGAGT

Winter et al. 1999

59

LG2

TA76s

(AAT)7 (AAT)4 [ACT(AAT)11]2 n(AAT)3 n(AAT)2 (ATT)5

TCCTCTTCTTCGATATCATCA

CCATTCTATCTTTGGTGCTT

Winter et al. 1999

48

LG1

TA113

(TAA)26

TCTGCAAAAACTATTACGTTAATACCA

TTGTGTGTAATGGATTGAGTATCTCTT

Winter et al. 1999

56

LG 1

TA116

(TAA)5n(A)3(TAA)20

AATTCAATGACGAATTTTTATAAGGG

AAAAAGAAAAGGGAAAAGTAGGTTTTA

Winter et al. 1999

59

NA

TA117

(ATT)52

GAAAATCCCAAATTTTTCTTCTTCT

AACCTTATTTAAGAATATGAGAAACACA

Winter et al. 1999

56

NA

TA118

(TAA)45

ACAAGTCACATGTGTTCTCAATA

GGAAAGGTTAAGAAATTTTACAATAC

Unpublished (P. Winter, Germany)

59

NA

TA130

(TAA)19

TCTTTCTTTGCTTCCAATGT

GTAAATCCCACGAGAAATCAA

Winter et al. 1999

59

LG2

TA135

(TAA)17

TGGTTGGAAATTGATGTTTT

GTGGTGTGAGCATAATTCAA

Winter et al. 1999

56

LG1

TA142

(TTA)15

TGTTAACATTCCCTAATATCAATAACTT

TTCCACAATGTTGTATGTTTTGTAAG

Winter et al. 1999

48

NA

TA200

(TTA)37

TTTCTCCTCTACTATTATGATCACCAG

TTGAGAGGGTTAGAACTCATTATGTTT

Winter et al. 1999

59

NA

TA206

(TAA)25

GTCCCACTTCCACTTATAAAGGTT

TAACGTATCTTGCAGATTTCAAATAAA

Winter etal, 1999

59

NA

TAA58

(AAT)41

CATTGCTTAAGAACCAAAATGG

CAATTTTACATCGACGTGTGC

Winter et al. 1999

56

LG5

TaaSH

(TAA)40

GGTAGACGCAAAAGAGTGGG

GCCACATTGACCAGGAATG

Winter et al. 1999

59

LG3

TR2

(TTA)36

GGCTTAGAGTTCAAAGAGAGAA

AACCAAGATTGGAAGTTGTG

Winter et al. 1999

56

LG1

TR29

(TAA)8n(TAA)32

GCCCACTGAAAAATAAAAAG

ATTTGAACCTCAAGTTCTCG

Winter et al. 1999

59

LG3

TR31

(TAA)20 n(A)5 (TAA)9

CTTAATCGCACATTTACTCTAAAATCA

ATCCATTAAAACACGGTTACCTATAAT

Winter et al. 1999

59

LG1

TR43

(TAA)24

AGGACGAAACTATTCAAGGTAAGTAGA

AATTGAGATGGTATTAAATGGATAACG

Winter et al. 1999

59

LG6

TR7

(TTA)25

GCATTATTCACCATTTGGAT

TGTGATAATTTTCTAAGTGTTTT

Winter et al. 1999

59

LG4

TS84

(TTA)25

TTATAACAGCTTCCTTCTATTTGTTTTG

AAGGCAAAAGTTTTTATCCCTTAATAG

Winter et al. 1999

59

NA

NCPGR4

(CT)16

TTACAGCTTGTGCTCAG

AGTCAGATTCTTATCCGA

Sethy et al. 2003

56

NA

NCPGR6

(CA)12

GACCAAGATTAGTAGAACCT

TATGTCTACACCTATGCATC

Sethy et al. 2003

56

NA

NCPGR7

(CA)14

GACCAAGATTAGTAGAACCT

CTTGATAAGGATGAGTCATG

Sethy et al. 2003

56

NA

NCPGR12

(CT)35

CCTTGTTAGTGTGTATAGGT

GTAATGACCAAGTGAACA

Sethy et al. 2003

56

NA

NCPGR19

(GA)19

TCCATTGTAGCTTAGCTTAG

TCTTACTCTTAGCTTACCTCTT

Sethy et al. 2003

56

NA